diff --git a/web/app/components/workflow/skill/file-operations-menu.tsx b/web/app/components/workflow/skill/file-operations-menu.tsx
index b48558c0b0..e4ac5c6b42 100644
--- a/web/app/components/workflow/skill/file-operations-menu.tsx
+++ b/web/app/components/workflow/skill/file-operations-menu.tsx
@@ -1,14 +1,31 @@
 'use client'
 
 import type { FC } from 'react'
-import { RiFileAddLine, RiFolderAddLine, RiFolderUploadLine, RiUploadLine } from '@remixicon/react'
+import type { NodeApi, TreeApi } from 'react-arborist'
+import type { TreeNodeData } from './type'
+import {
+  RiDeleteBinLine,
+  RiEdit2Line,
+  RiFileAddLine,
+  RiFolderAddLine,
+  RiFolderUploadLine,
+  RiUploadLine,
+} from '@remixicon/react'
 import * as React from 'react'
-import { useCallback, useRef } from 'react'
+import { useCallback, useRef, useState } from 'react'
 import { useTranslation } from 'react-i18next'
 import { useStore as useAppStore } from '@/app/components/app/store'
+import Confirm from '@/app/components/base/confirm'
 import Toast from '@/app/components/base/toast'
-import { useCreateAppAssetFile, useCreateAppAssetFolder } from '@/service/use-app-asset'
+import {
+  useCreateAppAssetFile,
+  useCreateAppAssetFolder,
+  useDeleteAppAssetNode,
+  useGetAppAssetTree,
+} from '@/service/use-app-asset'
 import { cn } from '@/utils/classnames'
+import { useSkillEditorStoreApi } from './store'
+import { getAllDescendantFileIds } from './type'
 
 /**
  * FileOperationsMenu - Menu content for file operations
@@ -53,12 +70,18 @@ type FileOperationsMenuProps = {
   onClose: () => void
   /** Optional className */
   className?: string
+  /** Tree API ref for context menu (to call node.edit()) */
+  treeRef?: React.RefObject<TreeApi<TreeNodeData> | null>
+  /** Node API for dropdown menu (to call node.edit()) */
+  node?: NodeApi<TreeNodeData>
 }
 
 const FileOperationsMenu: FC<FileOperationsMenuProps> = ({
   nodeId,
   onClose,
   className,
+  treeRef,
+  node,
 }) => {
   const { t } = useTranslation('workflow')
   const fileInputRef = useRef<HTMLInputElement>(null)
@@ -68,9 +91,19 @@ const FileOperationsMenu: FC<FileOperationsMenuProps> = ({
   const appDetail = useAppStore(s => s.appDetail)
   const appId = appDetail?.id || ''
 
+  // Store API for tab cleanup
+  const storeApi = useSkillEditorStoreApi()
+
   // Mutations
   const createFolder = useCreateAppAssetFolder()
   const createFile = useCreateAppAssetFile()
+  const deleteNode = useDeleteAppAssetNode()
+
+  // Tree data for descendant lookup
+  const { data: treeData } = useGetAppAssetTree(appId)
+
+  // Delete confirmation state
+  const [showDeleteConfirm, setShowDeleteConfirm] = useState(false)
 
   // Determine parent_id (null for root)
   const parentId = nodeId === 'root' ? null : nodeId
@@ -268,7 +301,59 @@ const FileOperationsMenu: FC<FileOperationsMenuProps> = ({
     }
   }, [appId, createFile, createFolder, onClose, parentId, t])
 
-  const isLoading = createFile.isPending || createFolder.isPending
+  // Handle Rename - trigger react-arborist inline editing
+  const handleRename = useCallback(() => {
+    // Context menu: use treeRef
+    if (treeRef?.current) {
+      const targetNode = treeRef.current.get(nodeId)
+      targetNode?.edit()
+    }
+    // Dropdown: use node directly
+    else if (node) {
+      node.edit()
+    }
+    onClose()
+  }, [nodeId, node, onClose, treeRef])
+
+  // Handle Delete click - show confirmation
+  const handleDeleteClick = useCallback(() => {
+    setShowDeleteConfirm(true)
+  }, [])
+
+  // Handle Delete confirm
+  const handleDeleteConfirm = useCallback(async () => {
+    try {
+      // Find descendant file IDs for tab cleanup
+      const descendantFileIds = treeData?.children
+        ? getAllDescendantFileIds(nodeId, treeData.children)
+        : []
+
+      await deleteNode.mutateAsync({ appId, nodeId })
+
+      // Close tabs for deleted files
+      descendantFileIds.forEach((fileId) => {
+        storeApi.getState().closeTab(fileId)
+        storeApi.getState().clearDraftContent(fileId)
+      })
+
+      Toast.notify({
+        type: 'success',
+        message: t('skillSidebar.menu.deleted'),
+      })
+    }
+    catch {
+      Toast.notify({
+        type: 'error',
+        message: t('skillSidebar.menu.deleteError'),
+      })
+    }
+    finally {
+      setShowDeleteConfirm(false)
+      onClose()
+    }
+  }, [appId, nodeId, deleteNode, storeApi, treeData?.children, onClose, t])
+
+  const isLoading = createFile.isPending || createFolder.isPending || deleteNode.isPending
 
   return (
     <div className={cn(
@@ -322,6 +407,46 @@ const FileOperationsMenu: FC<FileOperationsMenuProps> = ({
         onClick={() => folderInputRef.current?.click()}
         disabled={isLoading}
       />
+
+      {/* Divider before destructive actions */}
+      {nodeId !== 'root' && (
+        <>
+          <div className="my-1 h-px bg-divider-subtle" />
+
+          <MenuItem
+            icon={RiEdit2Line}
+            label={t('skillSidebar.menu.rename')}
+            onClick={handleRename}
+            disabled={isLoading}
+          />
+          <button
+            type="button"
+            onClick={handleDeleteClick}
+            disabled={isLoading}
+            className={cn(
+              'flex w-full items-center gap-2 rounded-lg px-3 py-2',
+              'hover:bg-state-destructive-hover disabled:cursor-not-allowed disabled:opacity-50',
+              'group',
+            )}
+          >
+            <RiDeleteBinLine className="size-4 text-text-tertiary group-hover:text-text-destructive" />
+            <span className="system-sm-regular text-text-secondary group-hover:text-text-destructive">
+              {t('skillSidebar.menu.delete')}
+            </span>
+          </button>
+        </>
+      )}
+
+      {/* Delete confirmation modal */}
+      <Confirm
+        isShow={showDeleteConfirm}
+        type="danger"
+        title={t('skillSidebar.menu.deleteConfirmTitle')}
+        content={t('skillSidebar.menu.deleteConfirmContent')}
+        onConfirm={handleDeleteConfirm}
+        onCancel={() => setShowDeleteConfirm(false)}
+        isLoading={deleteNode.isPending}
+      />
     </div>
   )
 }
diff --git a/web/app/components/workflow/skill/file-tree-context-menu.tsx b/web/app/components/workflow/skill/file-tree-context-menu.tsx
index 785b3a127f..971218f2be 100644
--- a/web/app/components/workflow/skill/file-tree-context-menu.tsx
+++ b/web/app/components/workflow/skill/file-tree-context-menu.tsx
@@ -1,19 +1,25 @@
 'use client'
 
 import type { FC } from 'react'
+import type { TreeApi } from 'react-arborist'
+import type { TreeNodeData } from './type'
 import { useClickAway } from 'ahooks'
 import * as React from 'react'
 import { useCallback, useRef } from 'react'
 import FileOperationsMenu from './file-operations-menu'
 import { useSkillEditorStore, useSkillEditorStoreApi } from './store'
 
+type FileTreeContextMenuProps = {
+  treeRef: React.RefObject<TreeApi<TreeNodeData> | null>
+}
+
 /**
  * FileTreeContextMenu - Right-click context menu for file tree
  *
  * Renders at absolute position when contextMenu state is set.
  * Uses useClickAway to close when clicking outside.
  */
-const FileTreeContextMenu: FC = () => {
+const FileTreeContextMenu: FC<FileTreeContextMenuProps> = ({ treeRef }) => {
   const ref = useRef<HTMLDivElement>(null)
   const contextMenu = useSkillEditorStore(s => s.contextMenu)
   const storeApi = useSkillEditorStoreApi()
@@ -41,6 +47,7 @@ const FileTreeContextMenu: FC = () => {
       <FileOperationsMenu
         nodeId={contextMenu.nodeId}
         onClose={handleClose}
+        treeRef={treeRef}
       />
     </div>
   )
diff --git a/web/app/components/workflow/skill/file-tree-node.tsx b/web/app/components/workflow/skill/file-tree-node.tsx
index 37def8f5b9..35f0941168 100644
--- a/web/app/components/workflow/skill/file-tree-node.tsx
+++ b/web/app/components/workflow/skill/file-tree-node.tsx
@@ -160,6 +160,7 @@ const FileTreeNode = ({ node, style, dragHandle }: NodeRendererProps<TreeNodeDat
             <FileOperationsMenu
               nodeId={node.data.id}
               onClose={() => setShowDropdown(false)}
+              node={node}
             />
           </PortalToFollowElemContent>
         </PortalToFollowElem>
diff --git a/web/app/components/workflow/skill/files.tsx b/web/app/components/workflow/skill/files.tsx
index 7c285af93a..bbdfbcee28 100644
--- a/web/app/components/workflow/skill/files.tsx
+++ b/web/app/components/workflow/skill/files.tsx
@@ -9,7 +9,8 @@ import { Tree } from 'react-arborist'
 import { useTranslation } from 'react-i18next'
 import { useStore as useAppStore } from '@/app/components/app/store'
 import Loading from '@/app/components/base/loading'
-import { useGetAppAssetTree } from '@/service/use-app-asset'
+import Toast from '@/app/components/base/toast'
+import { useGetAppAssetTree, useRenameAppAssetNode } from '@/service/use-app-asset'
 import { cn } from '@/utils/classnames'
 import FileTreeContextMenu from './file-tree-context-menu'
 import FileTreeNode from './file-tree-node'
@@ -63,6 +64,9 @@ const Files: React.FC<FilesProps> = ({ className }) => {
   const activeTabId = useSkillEditorStore(s => s.activeTabId)
   const storeApi = useSkillEditorStoreApi()
 
+  // Rename mutation for inline editing
+  const renameNode = useRenameAppAssetNode()
+
   // Convert Set to react-arborist OpenMap for initial state
   const initialOpenState = useMemo(() => toOpensObject(expandedFolderIds), [expandedFolderIds])
 
@@ -83,6 +87,20 @@ const Files: React.FC<FilesProps> = ({ className }) => {
     }
   }, [storeApi])
 
+  // Handle rename from react-arborist inline editing
+  const handleRename = useCallback(({ id, name }: { id: string, name: string }) => {
+    renameNode.mutateAsync({
+      appId,
+      nodeId: id,
+      payload: { name },
+    }).catch(() => {
+      Toast.notify({
+        type: 'error',
+        message: t('skillSidebar.menu.renameError'),
+      })
+    })
+  }, [appId, renameNode, t])
+
   // Auto-reveal when activeTabId changes (sync from tab click to tree)
   useEffect(() => {
     if (!activeTabId || !treeData?.children || !treeRef.current)
@@ -172,17 +190,17 @@ const Files: React.FC<FilesProps> = ({ className }) => {
           // Events
           onToggle={handleToggle}
           onActivate={handleActivate}
+          onRename={handleRename}
           // Disable features not in MVP
           disableDrag
           disableDrop
-          disableEdit
         >
           {FileTreeNode}
         </Tree>
       </div>
       <DropTip />
       {/* Right-click context menu */}
-      <FileTreeContextMenu />
+      <FileTreeContextMenu treeRef={treeRef} />
     </div>
   )
 }
diff --git a/web/app/components/workflow/skill/type.ts b/web/app/components/workflow/skill/type.ts
index 222d3456eb..fb6ce18b29 100644
--- a/web/app/components/workflow/skill/type.ts
+++ b/web/app/components/workflow/skill/type.ts
@@ -126,3 +126,39 @@ export function findNodeById(
   }
   return null
 }
+
+/**
+ * Get all descendant file IDs recursively (for tab cleanup on node delete)
+ * @param nodeId - Target node ID (file or folder)
+ * @param nodes - Tree nodes from API
+ * @returns Array of file IDs to close (the node itself if file, or all descendants if folder)
+ */
+export function getAllDescendantFileIds(
+  nodeId: string,
+  nodes: AppAssetTreeView[],
+): string[] {
+  const targetNode = findNodeById(nodes, nodeId)
+  if (!targetNode)
+    return []
+
+  // If deleting a file, return just that file's ID
+  if (targetNode.node_type === 'file')
+    return [targetNode.id]
+
+  // For folders, collect all descendant files
+  const fileIds: string[] = []
+
+  function collectFileIds(nodeList: AppAssetTreeView[]) {
+    for (const node of nodeList) {
+      if (node.node_type === 'file')
+        fileIds.push(node.id)
+      if (node.children && node.children.length > 0)
+        collectFileIds(node.children)
+    }
+  }
+
+  if (targetNode.children)
+    collectFileIds(targetNode.children)
+
+  return fileIds
+}
diff --git a/web/i18n/en-US/workflow.json b/web/i18n/en-US/workflow.json
index 9045d7f52f..c3ee529b9a 100644
--- a/web/i18n/en-US/workflow.json
+++ b/web/i18n/en-US/workflow.json
@@ -1005,6 +1005,11 @@
   "skillSidebar.folderName": "Folder name",
   "skillSidebar.loadError": "Failed to load files",
   "skillSidebar.menu.createError": "Failed to create item",
+  "skillSidebar.menu.delete": "Delete",
+  "skillSidebar.menu.deleteConfirmContent": "This will permanently delete the folder and all its contents. Any open files from this folder will be closed.",
+  "skillSidebar.menu.deleteConfirmTitle": "Delete folder?",
+  "skillSidebar.menu.deleteError": "Failed to delete folder",
+  "skillSidebar.menu.deleted": "Folder deleted successfully",
   "skillSidebar.menu.fileCreated": "File created successfully",
   "skillSidebar.menu.filesUploaded": "{{count}} file(s) uploaded successfully",
   "skillSidebar.menu.folderCreated": "Folder created successfully",
@@ -1013,6 +1018,8 @@
   "skillSidebar.menu.newFilePrompt": "Enter file name (with extension, e.g., script.py):",
   "skillSidebar.menu.newFolder": "New Folder",
   "skillSidebar.menu.newFolderPrompt": "Enter folder name:",
+  "skillSidebar.menu.rename": "Rename",
+  "skillSidebar.menu.renameError": "Failed to rename",
   "skillSidebar.menu.uploadError": "Failed to upload",
   "skillSidebar.menu.uploadFile": "Upload File",
   "skillSidebar.menu.uploadFolder": "Upload Folder",
diff --git a/web/i18n/zh-Hans/workflow.json b/web/i18n/zh-Hans/workflow.json
index bbad15d020..c5bd74ad2c 100644
--- a/web/i18n/zh-Hans/workflow.json
+++ b/web/i18n/zh-Hans/workflow.json
@@ -999,6 +999,11 @@
   "skillSidebar.folderName": "文件夹名称",
   "skillSidebar.loadError": "加载文件失败",
   "skillSidebar.menu.createError": "创建失败",
+  "skillSidebar.menu.delete": "删除",
+  "skillSidebar.menu.deleteConfirmContent": "这将永久删除该文件夹及其所有内容。该文件夹中已打开的文件标签将被关闭。",
+  "skillSidebar.menu.deleteConfirmTitle": "删除文件夹？",
+  "skillSidebar.menu.deleteError": "删除文件夹失败",
+  "skillSidebar.menu.deleted": "文件夹删除成功",
   "skillSidebar.menu.fileCreated": "文件创建成功",
   "skillSidebar.menu.filesUploaded": "成功上传 {{count}} 个文件",
   "skillSidebar.menu.folderCreated": "文件夹创建成功",
@@ -1007,6 +1012,8 @@
   "skillSidebar.menu.newFilePrompt": "请输入文件名（包含扩展名，如 script.py）：",
   "skillSidebar.menu.newFolder": "新建文件夹",
   "skillSidebar.menu.newFolderPrompt": "请输入文件夹名称：",
+  "skillSidebar.menu.rename": "重命名",
+  "skillSidebar.menu.renameError": "重命名失败",
   "skillSidebar.menu.uploadError": "上传失败",
   "skillSidebar.menu.uploadFile": "上传文件",
   "skillSidebar.menu.uploadFolder": "上传文件夹",