diff --git a/api/core/app/task_pipeline/workflow_cycle_manage.py b/api/core/app/task_pipeline/workflow_cycle_manage.py
index 8e7619adfd..89da11b76c 100644
--- a/api/core/app/task_pipeline/workflow_cycle_manage.py
+++ b/api/core/app/task_pipeline/workflow_cycle_manage.py
@@ -24,6 +24,7 @@ from core.app.entities.task_entities import (
 from core.file.file_obj import FileVar
 from core.model_runtime.utils.encoders import jsonable_encoder
 from core.workflow.entities.node_entities import NodeRunMetadataKey, NodeType, SystemVariable
+from core.workflow.workflow_engine_manager import WorkflowEngineManager
 from extensions.ext_database import db
 from models.account import Account
 from models.model import EndUser
@@ -66,6 +67,11 @@ class WorkflowCycleManage:
                            .scalar() or 0
         new_sequence_number = max_sequence + 1
 
+        inputs = {**user_inputs}
+        for key, value in (system_inputs or {}).items():
+            inputs[f'sys.{key.value}'] = value
+        inputs = WorkflowEngineManager.handle_special_values(inputs)
+
         # init workflow run
         workflow_run = WorkflowRun(
             tenant_id=workflow.tenant_id,
@@ -76,7 +82,7 @@ class WorkflowCycleManage:
             triggered_from=triggered_from.value,
             version=workflow.version,
             graph=workflow.graph,
-            inputs=json.dumps({**user_inputs, **jsonable_encoder(system_inputs)}),
+            inputs=json.dumps(inputs),
             status=WorkflowRunStatus.RUNNING.value,
             created_by_role=(CreatedByRole.ACCOUNT.value
                              if isinstance(user, Account) else CreatedByRole.END_USER.value),
@@ -202,6 +208,9 @@ class WorkflowCycleManage:
         :param execution_metadata: execution metadata
         :return:
         """
+        inputs = WorkflowEngineManager.handle_special_values(inputs)
+        outputs = WorkflowEngineManager.handle_special_values(outputs)
+
         workflow_node_execution.status = WorkflowNodeExecutionStatus.SUCCEEDED.value
         workflow_node_execution.elapsed_time = time.perf_counter() - start_at
         workflow_node_execution.inputs = json.dumps(inputs) if inputs else None
@@ -231,6 +240,9 @@ class WorkflowCycleManage:
         :param error: error message
         :return:
         """
+        inputs = WorkflowEngineManager.handle_special_values(inputs)
+        outputs = WorkflowEngineManager.handle_special_values(outputs)
+
         workflow_node_execution.status = WorkflowNodeExecutionStatus.FAILED.value
         workflow_node_execution.error = error
         workflow_node_execution.elapsed_time = time.perf_counter() - start_at
diff --git a/api/core/workflow/nodes/end/end_node.py b/api/core/workflow/nodes/end/end_node.py
index 3241860c29..d968321c30 100644
--- a/api/core/workflow/nodes/end/end_node.py
+++ b/api/core/workflow/nodes/end/end_node.py
@@ -24,10 +24,11 @@ class EndNode(BaseNode):
 
         outputs = {}
         for variable_selector in output_variables:
-            variable_value = variable_pool.get_variable_value(
+            value = variable_pool.get_variable_value(
                 variable_selector=variable_selector.value_selector
             )
-            outputs[variable_selector.variable] = variable_value
+
+            outputs[variable_selector.variable] = value
 
         return NodeRunResult(
             status=WorkflowNodeExecutionStatus.SUCCEEDED,
diff --git a/api/core/workflow/workflow_engine_manager.py b/api/core/workflow/workflow_engine_manager.py
index 9eb7b3af0b..be5bd1c17a 100644
--- a/api/core/workflow/workflow_engine_manager.py
+++ b/api/core/workflow/workflow_engine_manager.py
@@ -3,6 +3,7 @@ import time
 from typing import Optional
 
 from core.app.apps.base_app_queue_manager import GenerateTaskStoppedException
+from core.file.file_obj import FileVar
 from core.workflow.callbacks.base_workflow_callback import BaseWorkflowCallback
 from core.workflow.entities.node_entities import NodeRunMetadataKey, NodeRunResult, NodeType
 from core.workflow.entities.variable_pool import VariablePool, VariableValue
@@ -494,3 +495,30 @@ class WorkflowEngineManager:
                     variable_key_list=new_key_list,
                     variable_value=value
                 )
+
+    @classmethod
+    def handle_special_values(cls, value: Optional[dict]) -> Optional[dict]:
+        """
+        Handle special values
+        :param value: value
+        :return:
+        """
+        if not value:
+            return None
+
+        new_value = value.copy()
+        if isinstance(new_value, dict):
+            for key, val in new_value.items():
+                if isinstance(val, FileVar):
+                    new_value[key] = val.to_dict()
+                elif isinstance(val, list):
+                    new_val = []
+                    for v in val:
+                        if isinstance(v, FileVar):
+                            new_val.append(v.to_dict())
+                        else:
+                            new_val.append(v)
+
+                    new_value[key] = new_val
+
+        return new_value