diff --git a/api/core/agent/fc_agent_runner.py b/api/core/agent/fc_agent_runner.py
index dcc1326b33..c05c17b355 100644
--- a/api/core/agent/fc_agent_runner.py
+++ b/api/core/agent/fc_agent_runner.py
@@ -23,7 +23,7 @@ from core.model_runtime.entities import (
 )
 from core.model_runtime.entities.message_entities import ImagePromptMessageContent, PromptMessageContentUnionTypes
 from core.prompt.agent_history_prompt_transform import AgentHistoryPromptTransform
-from core.tools.entities.tool_entities import ToolInvokeMeta
+from core.tools.entities.tool_entities import ToolInvokeMeta, ToolProviderType
 from core.tools.tool_engine import ToolEngine
 from models.model import Message
 
@@ -234,6 +234,11 @@ class FunctionCallAgentRunner(BaseAgentRunner):
                         "meta": ToolInvokeMeta.error_instance(f"there is not a tool named {tool_call_name}").to_dict(),
                     }
                 else:
+                    inputs_to_pass = (
+                        kwargs.get("inputs")
+                        if tool_instance.tool_provider_type() == ToolProviderType.MCP
+                        else None
+                    )
                     # invoke tool
                     tool_invoke_response, message_files, tool_invoke_meta = ToolEngine.agent_invoke(
                         tool=tool_instance,
@@ -247,6 +252,7 @@ class FunctionCallAgentRunner(BaseAgentRunner):
                         app_id=self.application_generate_entity.app_config.app_id,
                         message_id=self.message.id,
                         conversation_id=self.conversation.id,
+                        inputs=inputs_to_pass,
                     )
                     # publish files
                     for message_file_id in message_files:
diff --git a/api/core/tools/__base/tool.py b/api/core/tools/__base/tool.py
index 8ca4eabb7a..bd793a140f 100644
--- a/api/core/tools/__base/tool.py
+++ b/api/core/tools/__base/tool.py
@@ -1,3 +1,4 @@
+import inspect
 from abc import ABC, abstractmethod
 from collections.abc import Generator
 from copy import deepcopy
@@ -49,6 +50,7 @@ class Tool(ABC):
         conversation_id: str | None = None,
         app_id: str | None = None,
         message_id: str | None = None,
+        inputs: dict[str, Any] | None = None,
     ) -> Generator[ToolInvokeMessage]:
         if self.runtime and self.runtime.runtime_parameters:
             tool_parameters.update(self.runtime.runtime_parameters)
@@ -56,13 +58,24 @@ class Tool(ABC):
         # try parse tool parameters into the correct type
         tool_parameters = self._transform_tool_parameters_type(tool_parameters)
 
-        result = self._invoke(
-            user_id=user_id,
-            tool_parameters=tool_parameters,
-            conversation_id=conversation_id,
-            app_id=app_id,
-            message_id=message_id,
-        )
+        # Construct the call parameter and pass in inputs only when the _invoke of the subclass accepts inputs
+        invoke_kwargs = {
+            "user_id": user_id,
+            "tool_parameters": tool_parameters,
+            "conversation_id": conversation_id,
+            "app_id": app_id,
+            "message_id": message_id,
+        }
+        if inputs is not None:
+            try:
+                sig = inspect.signature(self._invoke)
+                if "inputs" in sig.parameters:
+                    invoke_kwargs["inputs"] = inputs
+            except Exception:
+                # fallback: Do not pass inputs if reflection fails
+                pass
+
+        result = self._invoke(**invoke_kwargs)
 
         if isinstance(result, ToolInvokeMessage):
 
diff --git a/api/core/tools/mcp_tool/tool.py b/api/core/tools/mcp_tool/tool.py
index fbaf31ad09..d11f32e885 100644
--- a/api/core/tools/mcp_tool/tool.py
+++ b/api/core/tools/mcp_tool/tool.py
@@ -47,7 +47,13 @@ class MCPTool(Tool):
         conversation_id: str | None = None,
         app_id: str | None = None,
         message_id: str | None = None,
+        inputs: dict[str, Any] | None = None,
     ) -> Generator[ToolInvokeMessage, None, None]:
+        # If inputs is provided, flatten its key/value pairs into the tool_parameters.
+        # This is a conservative merge: only add a key from inputs if it does not already exist in tool_parameters.
+        for key, value in inputs.items():
+            if key not in tool_parameters:
+                tool_parameters[key] = value
         result = self.invoke_remote_mcp_tool(tool_parameters)
         # handle dify tool output
         for content in result.content:
diff --git a/api/core/tools/tool_engine.py b/api/core/tools/tool_engine.py
index 13fd579e20..3d0302a93e 100644
--- a/api/core/tools/tool_engine.py
+++ b/api/core/tools/tool_engine.py
@@ -55,6 +55,7 @@ class ToolEngine:
         conversation_id: str | None = None,
         app_id: str | None = None,
         message_id: str | None = None,
+        inputs: dict[str, Any] | None = None,
     ) -> tuple[str, list[str], ToolInvokeMeta]:
         """
         Agent invokes the tool with the given arguments.
@@ -79,7 +80,7 @@ class ToolEngine:
             # hit the callback handler
             agent_tool_callback.on_tool_start(tool_name=tool.entity.identity.name, tool_inputs=tool_parameters)
 
-            messages = ToolEngine._invoke(tool, tool_parameters, user_id, conversation_id, app_id, message_id)
+            messages = ToolEngine._invoke(tool, tool_parameters, user_id, conversation_id, app_id, message_id, inputs)
             invocation_meta_dict: dict[str, ToolInvokeMeta] = {}
 
             def message_callback(
@@ -197,6 +198,7 @@ class ToolEngine:
         conversation_id: str | None = None,
         app_id: str | None = None,
         message_id: str | None = None,
+        inputs: dict[str, Any] | None = None, 
     ) -> Generator[ToolInvokeMessage | ToolInvokeMeta, None, None]:
         """
         Invoke the tool with the given arguments.
@@ -214,7 +216,7 @@ class ToolEngine:
             },
         )
         try:
-            yield from tool.invoke(user_id, tool_parameters, conversation_id, app_id, message_id)
+            yield from tool.invoke(user_id, tool_parameters, conversation_id, app_id, message_id, inputs)
         except Exception as e:
             meta.error = str(e)
             raise ToolEngineInvokeError(meta)